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AT1G33420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.899
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 734 Blast hits to 722 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 264; Plants - 211; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMX2eggNOG:ENOG410YQGCEMBL:AC051630EMBL:AY035054
EMBL:AY051061EMBL:CP002684EnsemblPlants:AT1G33420EnsemblPlants:AT1G33420.1
entrez:840235EvolutionaryTrace:Q9C810Gene3D:3.30.40.10GeneID:840235
Genevisible:Q9C810GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0008270Gramene:AT1G33420.1hmmpanther:PTHR15856hmmpanther:PTHR15856:SF28
HOGENOM:HOG000238527InParanoid:Q9C810InterPro:IPR001965InterPro:IPR011011
InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787iPTMnet:Q9C810
KEGG:ath:AT1G33420OMA:LLCHVELPaxDb:Q9C810PDB:1WEE
PDBsum:1WEEPfam:PF00628Pfam:Q9C810PhylomeDB:Q9C810
PIR:H86457PRIDE:Q9C810PRO:PR:Q9C810PROSITE:PS01359
ProteinModelPortal:Q9C810Proteomes:UP000006548RefSeq:NP_564424.1scanprosite:PS01359
SMART:SM00249SMR:Q9C810STRING:3702.AT1G33420.1SUPFAM:SSF57903
TAIR:AT1G33420UniGene:At.17514UniGene:At.75640UniProt:Q9C810
Coordinates (TAIR10) chr1:-:12121063..12123346
Molecular Weight (calculated) 78098.40 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.31
Length 697 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVMNGGRAT KRARRSNRIS ADLYDFSTFP TAEINGESTT LPPFRDGVRT FLATHARVTF PPSTLFSSLM TWQIMLRPGD STDGSDLSSK LVSLDVVEED
101: VTRSSRSVYC EHCCVVGWSS HPVCRKRYRF IIRSGGDTKA CTRCGNTQNL SEGSNCKWCS MALDIENWVY SQLEDNTHLL HGVIHSNGYA HLLCLNGREG
201: GSGFLTGRAI MDFWDRLCSS LAVRKASVMD VSRKYGMDYR LLHGITRGCS WYSEWGYEFK SGSYALTKEA YQSAVDTLSA IPLSEFLFQG RKPRTQLHSI
301: ISFYQSLSCS ELVTVKDLFS FLLQMIRENS SKPASKSSVL CAWSKSDVER VQQTMVKILK ASGRPQANWV TRWALKRSIC KSASPQLIDY CLKHFGGVLV
401: DDGSRVVSSR CNPGSNDFEY RLESVNNVHR LSNQDVNNAS VEHVKQDLRY LYETLLHPQT MAEFRSRATR EKMIDAATKI LDCKHFIKDY LSSTVNPVAI
501: NLWCCVELSD ELKESPAPPP ERLVLPLNAT VSDLKIEAAK AFQEVYAMFK RFEVEELLGY GSIDDSITLK FLVGTNGVIR IKGRCSKHGL LRYRMERGVD
601: NWKVDCKCGT KDDDGERMLA CDGCGVWHHT RCIGINNADA LPSKFLCFRC IELYSKKPKQ SKKERGSSQV PKAGFVCRGE SAAMGSGSNL SVTLRVG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)