AT1G33320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, cystathionine gamma-synthase activity, catalytic activity; INVOLVED IN: methionine biosynthetic process, cellular amino acid metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT3G01120.1); Has 20280 Blast hits to 20270 proteins in 2456 species: Archae - 214; Bacteria - 11714; Metazoa - 220; Fungi - 816; Plants - 267; Viruses - 0; Other Eukaryotes - 7049 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12081009..12083462 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46006.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.09 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 412 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQILKENASN QRFVTRESEV NRICCGFNGF QLGERLRRDM KTSSITTLVV NTTTYFFKDT TELIDFKEKR IDLYEYARYG NPTTMALEEK ISVLEGAEST 101: LVMASGMYAS NVMLLALVPT NGHIVATKDC YKETRIFMEN FLTKLGITVT FIDSDDIAGL QTLVNNHEVS LFFTESPTNP FLRCVDIKLV SKICHRRGTL 201: VCIDATIATP INQKTLALGA DLVHHSATKY IGGHNDFLAG SISGSMELVS KIRNLHKLLG GTLNPNAAYL LIRGMKTMHL RVRQQNSTGM KMAQVLEAHP 301: KVSRVYYLGL PSHPEHLIAK RQMTGIGGLI SFEIDGDLKT TIKFIDALKI PYLAASFGGC ESLVDQLATG IWDIPREERL KDGFQDNLVR FSFGIEDFED 401: IKADVLQALE TI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)