AT1G32550.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2Fe-2S ferredoxin-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes FdC1, a ferredoxin protein capable of alternative electron partitioning. FdC1 level increases in conditions of acceptor limitation at PSI. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin 1 (TAIR:AT1G10960.1); Has 2669 Blast hits to 2667 proteins in 530 species: Archae - 94; Bacteria - 1212; Metazoa - 6; Fungi - 1; Plants - 619; Viruses - 5; Other Eukaryotes - 732 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11771969..11774117 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21917.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||
| Length | 194 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEDQYIL HSAESQNISL PFACRHGCCT 101: SCAVRVKSGE LRQPQALGIS AELKSQRISS LDLIQCQKTY LTGYALLCVG FPTSDLEVET QDEDEVYWLQ FGRYFARGPI ERDDYALELA MGDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)