AT1G32480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.811 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : isocitrate dehydrogenase IV | ||||||||
| Curator Summary (TAIR10) |
Predicted to encode a protein related isocitrate dehydrogenases, but it appears to be missing the sequences encoding the N-terminal portion of the protein. | ||||||||
| Computational Description (TAIR10) |
isocitrate dehydrogenase IV (IDH-IV); FUNCTIONS IN: oxidoreductase activity, NAD or NADH binding, magnesium ion binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: oxidation reduction, metabolic process; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase 1 (TAIR:AT4G35260.1); Has 12323 Blast hits to 12322 proteins in 2503 species: Archae - 387; Bacteria - 7994; Metazoa - 590; Fungi - 529; Plants - 231; Viruses - 0; Other Eukaryotes - 2592 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11741083..11741727 | ||||||||
| Molecular Weight (calculated) | 24416.20 Da | ||||||||
| IEP (calculated) | 6.77 | ||||||||
| GRAVY (calculated) | -0.28 | ||||||||
| Length | 214 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MPRPVTVIDS NVTNAVHQVM DAMQAPVYFE TYIIKGKNMN HLTWEVVDSI RKNKVCLNGR VNNSLCGGAR KELDLFASLV DCFNLNGQPS RHENVDIVVI 101: RENTEGEYAG REHEVVPGVI ESFQVTMTKF WSDRIAKYAF EYAHFSKRKK VTAVHNNGKY EKLADAFFLE SCQEVAKMYP NITYNEIGIN NCCLQLVEKP 201: ERFDVIVTPN LYGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)