AT1G32450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nitrate transporter 1.5 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nitrate transporter 1.5 (NRT1.5); CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NITRATE TRANSPORTER 1.8 (TAIR:AT4G21680.1); Has 7755 Blast hits to 7381 proteins in 1434 species: Archae - 0; Bacteria - 3851; Metazoa - 707; Fungi - 433; Plants - 2214; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11715337..11719807 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68702.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 614 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSCLEIYNKD TMKKKEGEEE TRDGTVDYYG RPSIRSNSGQ WVAGIVILLN QGLATLAFFG VGVNLVLFLT RVLQQNNADA ANNVSKWTGT VYIFSLVGAF 101: LSDSYWGRYK TCAIFQVIFV IGLSSLSLSS YMFLIRPRGC GDEVTPCGSH SMMEITMFYF SIYLIALGYG GYQPNIATLG ADQFDEEHPK EGYSKIAFFS 201: YFYLALNLGS LFSNTILGYF EDEGMWALGF WASTGSAIIG LILFLVGTPR YRYFKPTGNP LSRFCQVLVA ATKKSSVEAP LRGREEMYDG DSEGKNASVN 301: TGRRIVHTDE FKFLDKAAYI TARDLDDKKQ DSVNPWRLCP VTQVEEVKCI LRLMPIWLCT IIYSVVFTQM ASLFVEQGAA MNTSVSDFKI PPASMSSFDI 401: LSVALFIFLY RRVLEPVANR FKKNGSKGIT ELHRMGIGLV IAVIAMIAAG IVECYRLKYA DKSCTHCDGS SSLSIFWQAP QYSLIGASEV FMYVGQLEFF 501: NAQTPDGLKS FGSALCMMSM SMGNFVSSLL VTMVVKISTE DHMPGWIPRN LNKGHLDRFY FLLAALTSID LVVYIACAKW YKPIQLEGKD EMQDMSDDDY 601: DTESEEEREK DSKV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)