AT1G32375.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/RNI-like/FBD-like domains-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/RNI-like/FBD-like domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56390.1); Has 2073 Blast hits to 2026 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2072; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11679230..11680679 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47655.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.62 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 422 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKLSQLPEA LLVRILSLLS AKDVVSTMVL SKRWQFLWML VPKLIYDDSY QAIEYGSFSR FVDRSFTLHD AQVLDTLHFK LGKTSCGTGD IRVWIKTAEK 101: SCLRELIIEI DKSNSDNSSV VLPRSLYTCC RMLVTLKLNN AVLVDATSSF SFPSLKTLSL VSMKFPGDEL IKMLLSNCPV LEDLVVKRCP YDNVTTFTVR 201: VSSLKCLVLH ETELASINAD CGFVIDTPSL ECLDIEDGRG GFCVIENNMT KVVKANVCNS YVHTQQLMGS ISSVKRLYVC IPSSKDAYPV GSVFHCLVRL 301: TICTCETEWL NLLMCVLRDS PKLRELKLVK NHVYRSHQPR PCWNEPSAVP ECLLTSLETL EWVKYEGTEE EKEVAAFILR SGSCLKKVTI SSKSTDINKK 401: FEMLKELSLL FRRSPTCQIA FD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)