AT1G32180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.540 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cellulose synthase-like D6 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a gene similar to cellulose synthase | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11586516..11589651 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109658.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 979 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMDGESPLRH PRISHVSNSG SDFGSSSDYN KYLVQIPPTP DNNPGPASLS IVLLEIDSNQ ESVPSVSGDI VSGSSGKDNE PDLTDVRINV GEEEEDDTLL 101: SKISYSLTRV VKISPIIIAL YRILIVVRVV SLALFLFWRI RNPNNKALWL WLLSVICELW FAFSWLLDQI PKLFPVNHAT DIEALKATFE TPNPDNPTGK 201: SDLPGIDVFV STADAEKEPP LVTANTILSI LSVDYPVEKL SVYISDDGGS LVTFEAIAEA ASFAKIWVPF CRKHKIEPRN PESYFGLKRD PYKDKVRHDF 301: VRERRYVKRA YDEFKVRVNA LPHSIRRRSD AFNSKEEIKA LEKWKHWKVK VEEDQIKEPR PALVAPKATW MSDGTHWPGT WAVSGPHHSR GDHASVIQVL 401: LDPPGDEPVE GKGGEGRALD LEGVDIRLPM LVYVSREKRP GYDHNKKAGA MNALVRASAI MSNGPFILNL DCDHYVYNSR AFRDGICFMM DHDGDRVSYV 501: QFPQRFEGID PSDRYANKNT VFFDINLRAL DGIQGPMYVG TGCLFRRTAL YGFNPPDVFV VEEEPSGSYC FPLIKKRSPA TVASEPEYYT DEEDRFDIGL 601: IRKQFGSSSM LVNSVKVAEF EGRPLATVHS SRLGRPPGSL TGSRKPLDFA TVNEAVNVIS CWYEDKTEWG FNVGWIYGSV TEDVVTGFRM HEKGWRSFYC 701: VTEPDAFRGS APINLTDRLH QVLRWATGSV EIFFSRNNAI FAGPKLKLLQ RIAYLNVGIY PFTSIFILTY CFLPPLSLFS GHFVVETLTG SFLIYLLIIT 801: LSLCGLAVLE VKWSGISLEE WWRNEQFWLI GGTSAHLVAV LQGILKVIAG VEISFTLTSK SSTGGDDEDD EFADLYLFKW TALMIPPLTI IILNIVAILF 901: AVCRTVFSAN PQWSNLLGGT FFASWVLLHM YPFAKGLMGR GGKTPTVVYV WSGLIAICLS LLYITIKNSE IDGGSFMLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)