AT1G32120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.519 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11552926..11558608 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 134163.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.77 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||
| Length | 1206 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEESRGSSDQ EDEQIVQVRE ALMCPDGEKF ESLRTARFLN YTTASIDDDV FDLPLDAFVC RPPEGFDPTA KISFPGWGTP SLNWIEWVNV MAKSHATVWK 0101: KSGVYDAILA SRYQIKRHDD LIVALVEKWC IETNTFVFPW GEATLTLEDM IVLGGLSVTG NNALAPVKRD GMKEVEEKMK EAKRYIEVSL EKKCCVSMWM 0201: KEMMNSGNEI EHEAFMVSWL SRFVFTNSGD VLREKLFPAA VQLAKGVRLA LAPAVLARIY GDLGVLKEFL TGYSEKETVV VKSPFQFVQV WALERFMALQ 0301: PPGQPSQLKT GEPRIARWHH YGGGQDVYGY PENIRAVLDS AKESFDYRPY TKPVNNFRFP KFYFEDDCWV RVRPDENIVA FGRCLRFAKL VGLDCIEPYY 0401: PHRVALQFGY DQDVPGVVPA RIETPELAWK DYIRPIADGM LYFPARLHEA DVTVGYIRWW KLSVAVLQLG AEKIFKTLLA SHSKQKPVTT TTTAATTPTK 0501: VTKKISAAKA EGKDQEVVKK REIETKRETS VTGSSIEVSR ADGRSHGSSS YAGSLTGSEQ ATKHPFKKPE WVQRSSHRPK KSPDRSSDEP EWVETSSARS 0601: TKSPARSSDN LKWVQRSSPR STKSPDRSSG RAADDVKDLK GALRGSGGTK SQGHVTFQLP SSPGRSPSKT HTFSPKQSDS PVKKPNMLPR VADLAKQSSS 0701: SPWVPRHTSS VAHPPKQENY IKHHNSTSSR VSKESNRTPS VSSYPLKRKT SQRSPEAINS RGQKNPPSPR VSKEPYMSSS LSVSSSSTRK KPPRSHEAAN 0801: SRGYNHTPSL RASKEPYKSS SLSGSSSTRK KPPRSHEASS SRGYNHPPSP RVSKELNKTP SISGSPSATR NKSPRSSENV NSCGNSSSGG NSVVKRNTDT 0901: SIIVSKQESP IKTQLDISKA NKLLEEVVTL REQVGEDGIV RKMGSFKGHA LPGTLFLVVG VWHIWSSVVR YISNPSSFRV RVWHPVPGFN DRIKYLELYV 1001: VTIGSFIDLC IEFLYSTHLK FFVNGVLNPS HMNDFEHSGM LLMFFILGFI ALLSEKTRLL PLPQEALCLI AATAFTAECL LFFFHSTSHK GLEGYYHLLL 1101: VFLIGLCVIS SIAGAICPTS FPVDLCNGIA MTLQGLWFYQ TAFTLYGPMM PQGCSLKQNS VVCRSVDSEV SGEFLANFQL FSLVLAVLVC VVGSYVFAAS 1201: RFGVSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)