AT1G31920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 36071 Blast hits to 13961 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 83; Fungi - 93; Plants - 35305; Viruses - 0; Other Eukaryotes - 587 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11461864..11463684 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68600.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 606 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKAPILQSL LASRDDLTHN PEVNNFGGKE QECLYLLKRC HNIDEFKQVH ARFIKLSLFY SSSFSASSVL AKCAHSGWEN SMNYAASIFR GIDDPCTFDF 101: NTMIRGYVNV MSFEEALCFY NEMMQRGNEP DNFTYPCLLK ACTRLKSIRE GKQIHGQVFK LGLEADVFVQ NSLINMYGRC GEMELSSAVF EKLESKTAAS 201: WSSMVSARAG MGMWSECLLL FRGMCSETNL KAEESGMVSA LLACANTGAL NLGMSIHGFL LRNISELNII VQTSLVDMYV KCGCLDKALH IFQKMEKRNN 301: LTYSAMISGL ALHGEGESAL RMFSKMIKEG LEPDHVVYVS VLNACSHSGL VKEGRRVFAE MLKEGKVEPT AEHYGCLVDL LGRAGLLEEA LETIQSIPIE 401: KNDVIWRTFL SQCRVRQNIE LGQIAAQELL KLSSHNPGDY LLISNLYSQG QMWDDVARTR TEIAIKGLKQ TPGFSIVELK GKTHRFVSQD RSHPKCKEIY 501: KMLHQMEWQL KFEGYSPDLT QILLNVDEEE KKERLKGHSQ KVAIAFGLLY TPPGSIIKIA RNLRMCSDCH TYTKKISMIY EREIVVRDRN RFHLFKGGTC 601: SCKDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)