AT1G31470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.677 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NUCLEAR FUSION DEFECTIVE 4 (NFD4); INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G01630.1); Has 1240 Blast hits to 1181 proteins in 298 species: Archae - 26; Bacteria - 320; Metazoa - 7; Fungi - 207; Plants - 588; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11262937..11264944 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64063.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.27 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.43 | ||||||||||||||||||||||||||||||||||||||||
| Length | 582 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRPRIRDVSD KLRPNRASFD DGETKFHRKH LPPLRTMFGR WRKWTVLVAA IWIQASTGTN FDFSAYSSHL KSVLGISQVR LNYLAVASDL GKAFGWSSGI 101: ALGYFPLSVV LFAAAAMGFV GYGVQWLVIT NIITLPYSLV FLCCLLAGLS ICWFNTACFI LCIRHFPNNR ALALSLTVSF NGISAALYSL AFNAINPSSS 201: NLYLLLNSLV PLVVSFAALY PVLTKPSLDT TPDYDSRRHD SHVFTILNVL AVITSFHLLL SSSSTSSARL NFIGAVVLLV FPLCAPLLVY ARDYFLPVIN 301: ARLNHESSGY VMLNIDELKN QKTSVSSKTG YEHMGTAKEG NTVRLGDEHS FRLLISRLEF WLYYIAYFCG GTIGLVYSNN LGQIAQSLGQ NSTTLVTIYS 401: SFSFFGRLLS AAPDFMHKRF RLTRTGWFAI ALLPTPIAFF LLAVSSSQQT ALQTATALIG LSSGFIFAAA VSITSDLFGP NSVGVNHNIL ITNIPIGSLL 501: YGYIAASIYE ANASPDITPI VSDSIVCIGR DCYFKTFVFW GCLSILGVVS SLSLYIRTKP VYHRLEQDKV SLTSSYKDLD PL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)