AT1G31360.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.959 What is SUBAcon? |
|
||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||
| Description (TAIR10) | protein_coding : RECQ helicase L2 | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | ||||||||||||||||
| Computational Description (TAIR10) |
RECQ helicase L2 (RECQL2); CONTAINS InterPro DOMAIN/s: RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 27972 Blast hits to 27909 proteins in 2839 species: Archae - 320; Bacteria - 17784; Metazoa - 2771; Fungi - 1804; Plants - 1361; Viruses - 12; Other Eukaryotes - 3920 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
|
||||||||||||||||
| Coordinates (TAIR10) | chr1:+:11233174..11237412 | ||||||||||||||||
| Molecular Weight (calculated) | 65655.10 Da | ||||||||||||||||
| IEP (calculated) | 8.35 | ||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||
| Length | 580 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRGGTTLVV SPLLSLIQDQ VMGLAALGIS AYMLTSTSGK ENEKFVYKAL EKGEDDLKIL YVTPEKVSKS KRFMSKLEKC HNAGRLSLIS IDEAHCCSQW 101: GHDFRPDYKN LSILKTQFPK VPMVALTATA TQKVQNDLIE MLHIPKCVKF VSSVNRPNLF YSVREKSAVG KLVVDEIAEF IRESYSNNES GIVYCFSRKE 201: CEQIAGDLRE RGISADYYHA DMDANMREKV HMRWSKNKLQ VIVGTVAFGM GINKPDVRFV IHHSLSKSME TYYQESGRAG RDGLPSECIL FFRSADVPRQ 301: SSMVFYEYSG LQNLYDIVRY CQSKTKCRRS AFFRHFGEPS QDCNGMCDNC ALSSEVKEVD VSDLSKLVVS MVQETQAKDQ RVTMLQLGDK LRNKHKDLIA 401: ELKRDEVEHL VIKLIVDSVL KEEFQHTPYS TNAYVTMGPL ANQLLQGRKT IKMETSSRQT KKLKRSITFS GLELKLDELR KEISAADGSI LPHTVLSTQQ 501: IGSISSQKPV SLQELESIIG KLKTEKYGDR ILEEVMRHEA VSEQLVEDPT KEETCKSRLR KRAKTQKDVV LVESSGEEEA |
||||||||||||||||
| See Also |
|
||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)