AT1G31010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : organellar single-stranded DNA binding protein 4 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
organellar single-stranded DNA binding protein 4 (OSB4); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 9 (TAIR:AT4G20010.1); Has 227 Blast hits to 149 proteins in 27 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11054926..11056873 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40629.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.42 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 360 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQFLGRSISK SIRPSLNSTA RKSWVLSSQQ FLSTSSTESS SRTRGGGGGN RAEKSSEEWP RPMEVPYQPK IANSIDLIGY VHQPVQFDST LDGKFWAGTV 101: ISHEPSSDSK SESDSSSNFW IPVLFEGDLA HTANSYLKKN DRVHITGQIL GDVIQSGANS DQAHVQLFKS FHGSFSHQVM VRDLHYIEGS KAMPKVLPTL 201: DQNEGVLKHS ASVQRGREFG TNLWFDLVDK PNEWCDYREM KQNGSVNPKH PDFKKKDGSQ ALWLNNAPTE ILSELKDVKF DIPKYAKQPK AGEESWKDLV 301: DNMNKWWDNR VDKRTPKSPD FKHKETGVGL WLSDSPSWVL EKLPPPKSKT SDIYGVQEMF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)