AT1G30920.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.979 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G42430.1); Has 1576 Blast hits to 1495 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1576; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:11004242..11005444 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46007.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||
| Length | 400 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSEENTDSI PIDLILDILS RLPSKSIARC RCVSKLWESM IRQSYFTELF LTRSSSRPHL LIAVEQEGEW KFFSLPQPKN YLGKSSLVVA ANLHLKFFED 101: KRPQHGCSYA SSLIYFPNMT IRKKGDDHLG VICNPSTGQY GYVILPPLLD FKSVPYGKFL GFDPIDKQFK VLIPIFDFDK HQTDHHILTL GAETVGWRKI 201: QSPLRYLPHS NGTICINGIL YYLAKINYAM DKNVLVCFDV RSENFVFLRL NTYCSSTKLV NYKGKLGMIN QEYVDDGGFP LKLSVWVLED VGKEEWSTYV 301: YTLRDDNKVD QVKYNLSVVG VTASGEIVLV KKTQTLKPFY VLYFNPDKNT LLTVEVKGLH RGLYAVHRIY AFVDHVEDLE FNIMKTTYAA KSKFSQEDRF |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)