AT1G30780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.877 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box associated ubiquitination effector family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G30790.1); Has 3353 Blast hits to 2022 proteins in 226 species: Archae - 2; Bacteria - 315; Metazoa - 633; Fungi - 141; Plants - 1752; Viruses - 152; Other Eukaryotes - 358 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10923919..10926561 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54207.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.95 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||
| Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLSLVLRY VVFLSFFILQ KPKETFSSRL QRSHAKVAQI GADDYPSSGR NTPVHDLGFP DFPSFQEAVA PPPPPPDLPL LAPPLPDVPL LPPPAFPDFE 101: KPRLPVPVWP SLPEYPPFPF VDQSAPYQGF APRFDESANW MPSTPSIPQV FPCLRFKSNL LRVEFWVSSG TAVKGKDRFC NRPSKLDPNP VDLKTVRLPS 201: KFRLKKLLCR VESSEVCFGD GNEKDTNPSE IDLDSLPFDL KMVILTRLSA KSLTNFKRVS KMWSSIIGSQ RFIDSFFTMS SKQSRCPKFP VNTRFVGYDP 301: IDDQQKALSV SVPSRKRNLE HKVLTLGGGG QGWRHIEVTN APFSPVTVGV SIDGFVYYGA YSPTPPMNPV LVCFDVRSEK ISFIKAPNDV LQWGFDLWIL 401: EDVERHEWSK QTCVFPSSVA WDYVGDIQMS FPGTNKAGIG DDEEFRRCSG FVDEGECHVR IAPQHVESIA RFKDPIMSRI LM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)