AT1G30670.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G34820.1); Has 1015 Blast hits to 1013 proteins in 53 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 4; Plants - 1002; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:10879311..10880188 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 30446.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 264 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MIIPETDSFF FQEQPQHQPL YPDEALSPSL FGFDHYDHFY ESFLPSQEIF LPSPKTRVFN ESQELDSFHT PKHQKLIDSS FHFNSHDPFS PSPESNYLLD 101: SYITEASNIS KFQAPDFSST FKVGWTEQGD TKKRELSAQS IAARKRRRRI TEKTQELGKL IPGSQKHNTA EMFNAAAKYV KFLQAQIEIL QLKQTKMQTL 201: DSSKVGREMQ FLLGSQEIQE KLSTEEVCVV PREMVQVLKA EECILTNPKI SRDINKLLST NLMN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)