AT1G30660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nucleic acid binding;nucleic acid binding | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nucleic acid binding;nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: DNA modification, DNA metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Toprim domain, subgroup (InterPro:IPR006154), Toprim domain (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: toprim domain-containing protein (TAIR:AT1G30680.1); Has 599 Blast hits to 599 proteins in 131 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 44; Other Eukaryotes - 315 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10876853..10879017 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37809.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.93 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||
| Length | 337 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSENVPDHQS TNGFSSSDFF VPEEEAGKKV VLSKLVTLMR KLSEQGIDAQ NCPPGVRSCL ICPKCEVGDS GEKSLTLYIY PDGSSAKWTC RRKCGLKGVL 101: QVDGKLVSKD PIGKVERKIT VESIKLEPLC DEIQDFFAAR AISGKTLERN RVMQKRIDDE IVIAFTYWQR GELVSCKYRS LTKKFVQERN TRKILYGLDD 201: IEETSEIIIV EGEPDKLAME EAGFFNCVSV PDGAPETVSS KEIPSESKDT AFKYIWNCND YLKKASRIVI ATDGDGPGQA LAEELARRLG KERCWLVKWP 301: KKSEDEHFKD ANEVLMSKGP HLLKEAILNA EPYPLKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)