AT1G30455.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription regulators;translation initiation factors;zinc ion binding;transcription activators | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription regulators;translation initiation factors;zinc ion binding;transcription activators; FUNCTIONS IN: transcription regulator activity, transcription activator activity, zinc ion binding, translation initiation factor activity; INVOLVED IN: translational initiation, positive regulation of transcription, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT2G45100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10769722..10770775 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28599.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||||||||||||||
| Length | 254 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLYLTENRKY ENLVDPSTFI PRFSNKLLKG AHNKQVVETA THIIASMKSN WMQTGRKPSG ICGAALYTAA LSHGGSDPPS FQRAEKERME EKASTEENDK 101: QQNSDESSTL SDLDDGELDC YFRNPKEVHL VEIIFDHENP GYDEKEAAAL NACNNASNLF EASKAAAAKS RKDKRQQRAE EEKNAPPPAT AMEAVDSMVK 201: RKKFPDTNCD YLEELLDTSA QKASKRLKTE TVMEKNKEEH EIVENEQDEE DYAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)