AT1G29980.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.616 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF642 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT2G34510.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10503411..10504617 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40439.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.43 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||
| Length | 371 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGLVINGDF ETSPSSGFPD DGVTDGPSDI PSWKSNGTVE LINSGQKQGG MILIVPQGRH AVRLGNDAEI SQDLTVEKGF VYSVTFSAAR TCAQLESINV 101: SVASVNADAD DMLASRNVDL QTLYSVQGWD PYAWAFEAED DHVRLVFKNP GMEDDPTCGP IIDDIAIKKL FTPDKPKDNA VINGDFEDGP WMFRNTSLGV 201: LLPTNLDEEI SSLPGWTVES NRAVRFVDSD HFSVPKGKRA VELLSGKEGI ISQMVETKAD KPYILSFSLG HAGDKCKEPL AIMAFAGDQA QNFHYMAQAN 301: SSFEKAGLNF TAKADRTRVA FYSVYYNTRT DDMSSLCGPV IDDVRVWFSG SKRIGAGFGF WVFVLLVVGL V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)