AT1G29110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT1G29080.1); Has 7435 Blast hits to 7380 proteins in 647 species: Archae - 33; Bacteria - 74; Metazoa - 3227; Fungi - 2; Plants - 1844; Viruses - 137; Other Eukaryotes - 2118 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10171683..10173071 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38077.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.15 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||
| Length | 334 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSVRSVFVA LTILSMDLRI SQARPHVTLN EQSIVDYHQQ WMTQFSRVYK DESEKEMRLK VFKKNLKFIE NFNNMGNQSY TLGVNEFTDW KTEEFLATHT 101: GLRVNVTSLS ELFNKTKPSR NWNMSDIDME DESKDWRDEG AVTPVKYQGA CRLTKISGKN LLTLSEQQLI DCDIEKNGGC NGGEFEEAFK YIIKNGGVSL 201: ETEYPYQVKK ESCRANARRA PHTQIRGFQM VPSHNERALL EAVRRQPVSV LIDARADSFG HYKGGVYAGL DCGTDVNHAV TIVGYGTMSG LNYWVLKNSW 301: GESWGENGYM RIRRDVEWPQ GMCGIAQVAA YPVF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)