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AT1G28695.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.842
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G28710.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFG1eggNOG:ENOG410YCT3EMBL:KJ138670EMBL:KJ138980
EnsemblPlants:AT1G28695EnsemblPlants:AT1G28695.1entrez:2745765GeneID:2745765
GO:GO:0016021GO:GO:0016740Gramene:AT1G28695.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF817HOGENOM:HOG000238616InParanoid:Q3E6Y3InterPro:IPR005069
KEGG:ath:AT1G28695OMA:YKMETEDPfam:PF03407Pfam:Q3E6Y3
PhylomeDB:W8Q3Q6RefSeq:NP_973933.1TMHMM:TMhelixUniGene:At.51809
UniProt:Q3E6Y3UniProt:W8Q3Q6
Coordinates (TAIR10) chr1:-:10081894..10083054
Molecular Weight (calculated) 37918.80 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.14
Length 329 amino acids
Sequence (TAIR10)
(BLAST) 		001: MPLCNNFSGN LVVAVALFFA GALYIFNYQN YVNTLRTTQY PVDELEAALY TAAAGNNKTV IITMVNKAYV KEVGRGSTML DLFLESFWEG EGTLPLLDHL
101: MVVAVDQTAY DRCRFKRLHC YKMETEDGVD LEGEKVFMSK DFIEMMWRRT RLILDVLRRG YNVIFTDTDV MWLRSPLSRL NMSLDMQISV DRINVGGQLI
201: NTGFYHVRSN NKTISLFQKW YDMRLNSTGM KEQDVLKNLL DSGFFNQLGL NVGFLSTTEF SGFCQDSPHM GVVTTVHANC CLHIPAKVFD LTRVLRDWKR
301: YKASHVNSKW SPHLKCSRSW NDTHYIPRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)