AT1G28690.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G14820.1); Has 38334 Blast hits to 13612 proteins in 253 species: Archae - 1; Bacteria - 23; Metazoa - 125; Fungi - 112; Plants - 37440; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:10080042..10081604 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58141.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 520 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRIFRFTSIS PRILPSNHYS TFPLKQNVSS LSPAKYIAGA LQEHINSPAP KAGKKIHADI IKTGFQPDLN ISIKLLILHL KCGCLSYARQ VFDELPKPTL 101: SAYNYMISGY LKHGLVKELL LLVQRMSYSG EKADGYTLSM VLKASNSRGS TMILPRSLCR LVHARIIKCD VELDDVLITA LVDTYVKSGK LESARTVFET 201: MKDENVVCCT SMISGYMNQG FVEDAEEIFN TTKVKDIVVY NAMVEGFSRS GETAKRSVDM YISMQRAGFH PNISTFASVI GACSVLTSHE VGQQVHAQIM 301: KSGVYTHIKM GSSLLDMYAK CGGINDARRV FDQMQEKNVF SWTSMIDGYG KNGNPEEALE LFTRMKEFRI EPNYVTFLGA LSACSHSGLV DKGYEIFESM 401: QRDYSMKPKM EHYACIVDLM GRAGDLNKAF EFARAMPERP DSDIWAALLS SCNLHGNVEL ASIAASELFK LNADKRPGAY LALSNVYASN DKWDNVSKIR 501: EVMKRRRISK TIGRSWTSED |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)