AT1G28580.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT1G28570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10044603..10045874 | ||||||||
| Molecular Weight (calculated) | 34104.60 Da | ||||||||
| IEP (calculated) | 4.70 | ||||||||
| GRAVY (calculated) | -0.06 | ||||||||
| Length | 309 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MFFSLVLFTA EFLGLPLVPP FYGSHNANFE KGVNFAVGGA TALERSFLED RGIHFPYTNV SLGVQLNSFK ESLPSICGSP SDCRDMIENA LILMGEIGGN 101: DYNYAFFVDK GIEEIKELMP LVITTISSAI TELIGMGGRT FLVPGEFPVG CSVLYLTSHQ TSNMEEYDPL TGCLKWLNKF GENHGEQLRA ELNRLQKLYP 201: HVNIIYADYY NALFHLYQEP AKFGFMNRPL SACCGAGGPY NYTVGRKCGT DIVESCDDPS KYVAWDGVHM TEAAYRLMAE GILNGPYAIP PFDWSCRSSG 301: VKNSGSSDT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)