suba logo
AT1G28510.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Optic atrophy 3 protein (OPA3)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Optic atrophy 3 protein (OPA3); CONTAINS InterPro DOMAIN/s: Optic atrophy 3-like (InterPro:IPR010754); BEST Arabidopsis thaliana protein match is: Optic atrophy 3 protein (OPA3) (TAIR:AT3G58150.1); Has 397 Blast hits to 393 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 155; Fungi - 114; Plants - 80; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111J9CeggNOG:KOG3335EMBL:AC010155EMBL:AF412051
EMBL:AY072613EMBL:AY085695EMBL:CP002684EnsemblPlants:AT1G28510
EnsemblPlants:AT1G28510.1entrez:839751GeneID:839751Gramene:AT1G28510.1
hmmpanther:PTHR12499hmmpanther:PTHR12499:SF3HOGENOM:HOG000238274InterPro:IPR010754
KEGG:ath:AT1G28510ncoils:CoilOMA:YHWIEMRPANTHER:PTHR12499
Pfam:PF07047PhylomeDB:Q9SGP9Proteomes:UP000006548RefSeq:NP_564311.1
STRING:3702.AT1G28510.1TAIR:AT1G28510UniGene:At.26410UniProt:Q9SGP9
Coordinates (TAIR10) chr1:+:10024036..10025939
Molecular Weight (calculated) 19180.30 Da
IEP (calculated) 10.33
GRAVY (calculated) -0.49
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLPLMKLGT LAVKTISKPL ASQLKHQAKV HPKFRQSIIN FAQRNHRITT QMQRRIYGHA TDVEIRPLDE EKAVQAAVDL IGEIFLFGVG GAVVVFEVQR
101: SSRSEARKEE ARKQELEELR IKDEELEKQV ADLKSKLEEL EQLAKARGLS GIFQLKPQPG TTASGKPDKS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)