AT1G28180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G33730.1); Has 41935 Blast hits to 41307 proteins in 3020 species: Archae - 790; Bacteria - 20440; Metazoa - 6535; Fungi - 4421; Plants - 2648; Viruses - 20; Other Eukaryotes - 7081 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9843084..9845002 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71723.10 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 614 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTAMEKKTL DFDNLTKPVF LTKAHRKELA LKRCQDEIAD RDRRSIVQIS RSNSDNDDGN RPRDVKRERH RSHDHDRNRE SDREFREREV KARVEKLEMV 101: KREKEINAMK EQYLGTTKPK KRVIMKPSKN FRFDWENTED TLSGEMNVLY QNPHEAQPLF GRGCRAGIDR REQKKLMTGK HEREKREEED KHWSEKKLEE 201: MNERDWRIFK EDFNISYRGS KIPHPMRNWE ETIPLGLEQR DVIGISATGS GKTAAFVLPM LAYISRLPPM REENQTEGPY ALVMVPTREL AHQIEEETVK 301: FSRYLGFKAV SITGWESIEK QALKLSQGCE IVIATPGRLL DCLERRYVVL NQCNYLVLDE ADRMIDMDFE PQVSEVLDVM PCSNLKPEKE DEELEEKKIY 401: RTTYMFSATM LLSVERLARK FLRNPVVVTI GETTKFITQQ VIMTKESDKF SRLKKLIDDL GDDKTAIVFV NTRNKVDYIV KNLEKVGRCR VTTLHAGKSQ 501: EQRDYSLEEF KKKRFNVLVT TDVLGRGLDI LDLAQVINYD MPNTMDLYTH RIGRTGRAGK TGVATTFLTL EDKDVFYGLK QKLNECNSLV PPELARHEAS 601: KFKPGTFPDR FSHF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)