AT1G28020.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.558 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G11380.1); Has 2264 Blast hits to 1608 proteins in 100 species: Archae - 2; Bacteria - 23; Metazoa - 10; Fungi - 2; Plants - 2192; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:9768395..9771157 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70829.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||
| Length | 612 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSSFPFVYQ NMLAKRPYGA YQNVITVSMS WLKIHGSCPH RITDALHRNA QIIPVLEQWR QQGNQVNPSH VRVIIKKLRD SDQSLQALQV SEWMSKEKIC 101: NLIPEDFAAR LHLIENVVGL EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM SLYSALKNRE KVEELLLEMK 201: DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL 301: RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP 401: SDLKCLIKNL RDSKQFSKAL QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA KSDKNLGNMV DEILREMEEN 501: NVDPDLITVN HVLKVYAAES KIQAMEMFMR RWAVEVYGDV ARCKREVHNL WDECKNNKEE EVEDGKKRLP VVTTLLKMDD DGYRTVISSL LKLDDVQGVE 601: KVYGEWKPKA GC |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)