AT1G27960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : evolutionarily conserved C-terminal region 9 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
evolutionarily conserved C-terminal region 9 (ECT9); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 5 (TAIR:AT3G13060.2); Has 956 Blast hits to 946 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 416; Fungi - 120; Plants - 329; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9742359..9745648 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61280.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||
| Length | 539 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASYRSTDW FPPTTTTGSF TGLNTDQSVL QDQDIVSSRP FCGQGTESFH IGADTPRSNH SHSDVPSFDK VSPGMINEMF YHSNGVPSDF QRSSLSTRNQ 101: SSLQHYGDLY ADDSRYFVPF HLSNQQYPTP EDIHLSPEFH MFQANSRHFD RHVNERNSSE IDNMMRARGN SVLRDNIYGE PRGMNLNPFS GENMFPPLAS 201: TRPCMRHLGS AELLANDFNM GPAHGGLHDA FESAANLSYR EQAYAQCKRS PFSASSSSPT WENDYNLPPL DEARSESYND FSHCPAMLDM LTESNRGPRA 301: SRLNSKSKMI SYDRVDRFCQ QELLSQFRDA KFFVIKSYSE DNVHKSIKHC VWASTKNGNK KLDAAYREAK KKDVACPVFL LFSVNASSQF CGVAEMVGPV 401: DFNTSVEYWQ QDRWSGHFPV QWLIVKDVPN SLFRHIIIES NDNKPVTNSR DTQEVGLEKG IEMLDIFISC EMRSSILDDF NFYEERQIAI QDRKARQRAV 501: LESLALSATS APTYSLHDDF VREMSKHFAE ALALQHRPK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)