AT1G27510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3506) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to singlet oxygen; LOCATED IN: thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3506 (InterPro:IPR021894), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3506) (TAIR:AT4G33630.2); Has 287 Blast hits to 280 proteins in 95 species: Archae - 0; Bacteria - 15; Metazoa - 66; Fungi - 43; Plants - 121; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9554945..9558293 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72134.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||
| Length | 651 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATTQPCLIG QIIAVPQFHI LFSPRNSLKP ELSTNKRTNF SVSIGLRHSF ASSISTCNPK APSLSCLRNC AAVDGADTSS SEDKWDWDWD RWNRHFSEIE 101: EVESVVSLLK SQLEDAVEKE DFEEAVKLKQ AISEATVDDA VAEIMRQLQT AVNEERYHDA SRLCNETGSG LVGWWVGLPR DSEEPFGRIV HITPGVGRFI 201: GKSYSPRQLV AEAAGTPLFE IFVIKDTDGG YVMQVVYVQH VKQNLTISEN SFSKVQQSSK SSINDPSILD VRGSELKVDK KEDTQLNAGE PTEEGIKNVI 301: KFLKDKIPGL KLKVMDVIKI PEEEIVGSDD ATEELVGEGT EETNSSDDEE EVEEEENDSI EAISSMDSAD YGKHSNTKLV IGGVLHNIED SSIDDEIVRV 401: SANIMDTERD SFILHVPGRS KRDIDTRKNR VSKEQVTALA AQGLSDLLPP EVAEAFWGEK ASLKVSKHVH EIVKLAINQA QKGNHLSEYT AFNRIITPES 501: NLDPFDGLYV GAFGPYGTEI VQLKRKYGRW DDAEGSNSSD IEFFEYVEAV KLTGDPNVPA GQVTFRARIG NGSRMTNHGL FPEELGVLAS YRGQGKIADF 601: GFKKPRWVEG KLLKLNGKGM GPYVKGADLG FLYIGPEQSF LVLFNRLRLP E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)