AT1G27380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ROP-interactive CRIB motif-containing protein 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROP-interactive CRIB motif-containing protein 2 (RIC2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen tube growth; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); Has 111 Blast hits to 111 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9508903..9509827 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 12586.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.60 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 111 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRNGANMLD GRVESDAKGS FRKDYTKMEN NNNGANISDG IYRIIRSFKS FSHFFIRYEE ETKEREAEME IGFPTDVKHL SHIGVDGTMT TFDNTSSSFP 101: FSGFHLTGTV V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)