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AT1G27290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31826923 (2020): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1VQeggNOG:ENOG410YW5YEMBL:AF386951EMBL:AY072464
EMBL:CP002684EnsemblPlants:AT1G27290EnsemblPlants:AT1G27290.1EnsemblPlants:AT1G27290.2
entrez:839618GeneID:839618GO:GO:0016021Gramene:AT1G27290.1
Gramene:AT1G27290.2hmmpanther:PTHR34781hmmpanther:PTHR34781:SF2HOGENOM:HOG000238621
KEGG:ath:AT1G27290OMA:VGRSILCPhylomeDB:Q94F23Proteomes:UP000006548
RefSeq:NP_001077602.1RefSeq:NP_564274.1STRING:3702.AT1G27290.1TAIR:AT1G27290
TMHMM:TMhelixUniGene:At.20786UniGene:At.71991UniProt:Q94F23
Coordinates (TAIR10) chr1:+:9481788..9482576
Molecular Weight (calculated) 15676.50 Da
IEP (calculated) 9.78
GRAVY (calculated) 0.51
Length 142 amino acids
Sequence (TAIR10)
(BLAST)
001: MMRRQRDEQQ SRVFYDLSSL VLNLLRSPPM PISLPDHFPD PPARIRPPFS SHRFSSSSPS LAHISPSGFA SLLLGISVAL MLCGSVTFFI GFLLMPWVLA
101: LILVFYVAGI VSAISMVGRS ILCYVLTPPS PSGKEISEWK LL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)