AT1G27170.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.996 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : transmembrane receptors;ATP binding | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:9434718..9439219 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 156381.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.49 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1384 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MESGVVSKPH RLKYDVFLSF RGADTRDNFG DHLYKALKDK VRVFRDNEGM ERGDEISSSL KAGMEDSAAS VIVISRNYSG SRWCLDELAM LCKMKSSLDR 0101: RILPIFYHVD PSHVRKQSDH IKKDFEEHQV RFSEEKEKVQ EWREALTLVG NLAGYVCDKD SKDDDMIELV VKRVLAELSN TPEKVGEFIV GLESPLKDLT 0201: GLIDTESSSG VQVLGLYGMG GIGKTTLAKA FYNKIVGNFE QRAFISDIRE RSSAENGLVT LQKTLIKELF RLVPEIEDVS IGLEKIKANV HEKKIIVVLD 0301: DVDHIDQVHA LVGETRWYGQ GTLIVITTRD SEILSKLSVN QQYEVKCLTE PQALKLFSYH SLRKEEPTKN LLALSKKIVQ ISGLLPLAVE VFGSLLYDKK 0401: EEKDWQTQLD KLKKTQPGNL QDVLELSFKS LDDEEKKVFL DIACLFLKME IKKDEVVIVL KGCGLNAEAA LSVLRQKSLV KILANDTLWM HDQIRDMGRQ 0501: MVLKESREDP GLRSRLWDRG EIMTVLNNMK GTSSIRGIVL DFKKKFARDP TADEIVSRNL RNNPGIYSVF NYLKNKLVRF PAEEKPKSSE ITIPVESFAP 0601: MTKLRLLQIN NVELEGNLKL LPSELKWIQW KGCPLENLPP DFLARQLSVL DLSESGIRQV QTLRNKMVDE NLKVVILRGC HSLEAIPDLS NHEALEKLVF 0701: EQCTLLVKVP KSVGNLRKLI HLDFRRCSKL SEFLVDVSGL KLLEKLFLSG CSDLSVLPEN IGAMTSLKEL LLDGTAIKNL PESINRLQNL EILSLRGCKI 0801: QELPLCIGTL KSLEKLYLDD TALKNLPSSI GDLKNLQDLH LVRCTSLSKI PDSINELKSL KKLFINGSAV EELPLKPSSL PSLYDFSAGD CKFLKQVPSS 0901: IGRLNSLLQL QLSSTPIEAL PEEIGALHFI RELELRNCKF LKFLPKSIGD MDTLYSLNLE GSNIEELPEE FGKLEKLVEL RMSNCKMLKR LPESFGDLKS 1001: LHRLYMKETL VSELPESFGN LSNLMVLEML KKPLFRISES NVPGTSEEPR FVEVPNSFSK LLKLEELDAC SWRISGKIPD DLEKLSCLMK LNLGNNYFHS 1101: LPSSLVKLSN LQELSLRDCR ELKRLPPLPC KLEQLNLANC FSLESVSDLS ELTILTDLNL TNCAKVVDIP GLEHLTALKR LYMTGCNSNY SLAVKKRLSK 1201: ASLKMMRNLS LPGNRVPDWF SQGPVTFSAQ PNRELRGVII AVVVALNDET EDDDYQLPDV MEVQAQIHKL DHHKCTNTLH LSGVPRTNND QLHICRYSAF 1301: HPLVTMLKDG YTIQVIKRNP PIKQGVELKM HGIHLVYEGD DDLEGRENTL PETQQTVSQK LANFFSSFEE EEGETISESE STVI |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)