AT1G27110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.876 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G27150.1); Has 512 Blast hits to 499 proteins in 150 species: Archae - 27; Bacteria - 221; Metazoa - 81; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9413018..9417392 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 54817.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||
| Length | 483 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEASCTMSLK CMKEESRFVS CGYEVNTSSD DCIASINSYS DQVLGYGREK KVILEAPNYD NDCVLANILA AHYLSSFDPV RARSYALAAE SRLGKATLYE 101: KAVFEAVSYL LSENMDDDVA LELHSKLLKK FPKDLLSWKR VETLCSYMGR HDLSLPLFRK ILPQNEGQVY VNGMLAFCLI ELGHLREAEE AARKGCEINE 201: NDSWAHHALC HVLQTECRFK EAVKFMEEHS DSWDSCSSLR FSHNWWHVAV CYLEGGSHIS KVEEVYDHQM WKELEKDDAV ARDVYTDALG LLLRLDTRGK 301: LDDGFQDRLE KLADSLTDKA MWYQDWLFDI TTIWALSKVE KTSLAHELLE GLKSRTSAMN PKKQKLMQKA ILLAEAVYEY GKGNYEIALE LLGLDFDAAN 401: YKVIGGSGLQ MDVFNEIWYK LLLLNGKSST AIEVLEKVTK QRDGAPFLWR LLEESYSMEG KEKAGISAGK KAKALESSYF KSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)