AT1G27060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.668 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of chromosome condensation (RCC1) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 19815 Blast hits to 6041 proteins in 472 species: Archae - 85; Bacteria - 2553; Metazoa - 7293; Fungi - 979; Plants - 2476; Viruses - 2; Other Eukaryotes - 6427 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9395023..9396673 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40732.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||
| Length | 386 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS 101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV 201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP 301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)