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AT1G27045.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Homeobox-leucine zipper protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeobox-leucine zipper protein family; FUNCTIONS IN: sequence-specific DNA binding, transcription regulator activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox 1 (TAIR:AT3G01470.1).
Protein Annotations
eggNOG:ENOG410Z2UEeggNOG:KOG0483EMBL:AC000348EMBL:CP002684
EnsemblPlants:AT1G27045EnsemblPlants:AT1G27045.1entrez:10723019Gene3D:1.10.10.60
GeneID:10723019GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0043565Gramene:AT1G27045.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF136
HOGENOM:HOG000006194InParanoid:P0CJ65InterPro:IPR000047InterPro:IPR001356
InterPro:IPR003106InterPro:IPR009057InterPro:IPR017970KEGG:ath:AT1G27045
ncoils:CoilPaxDb:P0CJ65Pfam:P0CJ65Pfam:PF00046
Pfam:PF02183Pfscan:PS50071PhylomeDB:P0CJ65PRINTS:PR00031
PRO:PR:P0CJ65PROSITE:PS00027PROSITE:PS50071ProteinModelPortal:P0CJ65
Proteomes:UP000006548RefSeq:NP_001185103.1scanprosite:PS00027SMART:SM00389
STRING:3702.AT1G27045.1SUPFAM:SSF46689TAIR:AT1G27045UniGene:At.75357
UniProt:P0CJ65
Coordinates (TAIR10) chr1:+:9391893..9392887
Molecular Weight (calculated) 26625.20 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.87
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MENSDTDSEV FFWFQNQNQN HSHKFPSSCF PPSSHSAFYG SSSMINTETA TMDEEDVCES YMMREITKKR KLTPIQLRLL EESFEEEKRL EPDRKLWLAE
101: KLGLQPSQVA VWFQNRRARY KTKQLEHDCD SLKASYAKLK TDWDILFVQN QTLKSKVDLL KEKLKMQENL ETQSIERKRL GEEGSSVKSD NTQYSEEEGL
201: ENQYSFPELA VLGFYYDPTL TASNLRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)