AT1G27040.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.768 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9386893..9389838 | ||||||||
| Molecular Weight (calculated) | 62167.50 Da | ||||||||
| IEP (calculated) | 9.38 | ||||||||
| GRAVY (calculated) | 0.46 | ||||||||
| Length | 563 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MHGDVSKWEG YADWRNKAAL RGRHGGMLAA SFVLAVEILE NLAFLANASN LVLYLKNFMH MSLARSSSEV TTFMATAFLL ALLGGFLADA FFSTFVIFLI 101: SASIEFLGLI LLTIQARRPS LMPPPCKSSA ALRCEVVGGS KAAFLFVGLY LVSLGIGGIK GSLPSHGAEQ FDEGTPKGRK QRSTFFNYYV FCLSCGALVA 201: VTFVVWIEDN KGWEWGFGVS TISIFLSILV FLLGSRFYKN KIPRGSPLTT IFKVLLAASI VSCSSKTSSN HFTSREVQSE HEEKTPSQSL TNSLTCLNKA 301: IEGKTHHIWL ECTVQQVEDV KIVLKMLPIF GCTIMLNCCL AQLSTYSVHQ AATMNRKIVN FNVPSASLPV FPVVFMLILA PTYDHLIIPF ARKVTKSEIG 401: ITHLQRIGVG LVLSIVAMAV AALVELKRKQ VAREAGLLDS EETLPITFLW IALQYLFLGS ADLFTLAGLL EFFFTEAPSS MRSLATSLSW ASLALGYYLS 501: SVMVPIVNRV TKSAGQSPWL GEKLNRNRLD LFYWLMCVLS VVNFLHYLFW AKRYKYISTG SIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)