AT1G26760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SET domain protein 35 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SET domain protein 35 (SDG35); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: SET domain group 37 (TAIR:AT2G17900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9248304..9249941 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61311.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.16 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 545 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGEQFELEE DRDGPLELLQ SLRSKATELL LREEWEESIK VYTEFIDLSR RQVSSTGGSD PDPDSIAKLR KSLCLALCNR AEARARLRDF LEAMRDCDQA 101: LEIEKTHFKT LLCKGKVLLG LSKYSLALEC FKTALLDPQA SDNLETVTVY IEKCKKLEFQ AKTGAFDLSD WILSEFRGKC PELAEFIGSI EIKKSELSGR 201: GLFATKNIVA GTLVLVTKAV AIERGILGNG ECGEKAQLIM WKNFVEEVTE SVRKCGRTRR VVSALSTGQG EDSLEIPEIA LFRPDEAFET CGDWKQSLDT 301: EKLLSILDVN SLVEDAVSGK VMGKNKEYYG VGLWTLASFI NHSCIPNARR LHVGDYVIVH ASRDIKTGEE ISFAYFDVLS PLEKRKEMAE SWGFCCGCSR 401: CKFESVLYAT NQEVREFEMG LERGVDAGNA VYMVEEGMKR WKVKGKDKGL LRASYWGVYD EIYNSERLMK RWGRKIPTME VVVDSVSDVV GSDERLMKMA 501: VEGMMKKHGG FSNIVEMEKI MKLGKGVYGK VVSKKKAMKT LLGIE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)