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AT1G26310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : K-box region and MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants.
Computational
Description (TAIR10)
CAULIFLOWER (CAL); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, floral meristem determinacy; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 8035 Blast hits to 8024 proteins in 979 species: Archae - 8; Bacteria - 30; Metazoa - 829; Fungi - 313; Plants - 6634; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).
Protein Annotations
BioGrid:24408DIP:DIP-33764NeggNOG:COG5068eggNOG:KOG0014
EMBL:AB493477EMBL:AC079829EMBL:AF061401EMBL:AF061402
EMBL:AF061403EMBL:AF061404EMBL:AF061405EMBL:AF061406
EMBL:AF061407EMBL:AF061408EMBL:AF061409EMBL:AF061410
EMBL:AF061411EMBL:AF061412EMBL:AF061413EMBL:AF061414
EMBL:AF061415EMBL:CP002684EMBL:L36925EnsemblPlants:AT1G26310
EnsemblPlants:AT1G26310.1entrez:839172GeneID:839172Genevisible:Q39081
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009911GO:GO:0010582GO:GO:0030154Gramene:AT1G26310.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF155InParanoid:Q39081IntAct:Q39081
InterPro:IPR002100InterPro:IPR002487KEGG:ath:AT1G26310KO:K09264
ncoils:CoilOMA:LIAPDSHPaxDb:Q39081Pfam:PF00319
Pfam:PF01486Pfam:Q39081Pfscan:PS50066Pfscan:PS51297
PhylomeDB:Q39081PIR:E86389PRIDE:Q39081PRINTS:PR00404
PRO:PR:Q39081PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297
ProteinModelPortal:Q39081Proteomes:UP000006548RefSeq:NP_564243.1scanprosite:PS00350
SMART:SM00432SMR:Q39081STRING:3702.AT1G26310.1SUPFAM:SSF55455
TAIR:AT1G26310tair10-symbols:AGL10tair10-symbols:CALtair10-symbols:CAL1
UniGene:At.41269UniProt:Q39081
Coordinates (TAIR10) chr1:-:9100330..9103510
Molecular Weight (calculated) 30189.20 Da
IEP (calculated) 8.30
GRAVY (calculated) -0.87
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRVELKR IENKINRQVT FSKRRTGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE SCMEKVLERY ERYSYAERQL IAPDSHVNAQ TNWSMEYSRL
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)