AT1G26200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.859 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 longevity assurance homolog 3 (TAIR:AT1G13580.3); Has 1245 Blast hits to 1245 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 593; Fungi - 293; Plants - 188; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9063471..9064914 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37168.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.87 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.17 | ||||||||||||||||||||||||||||||||||||
| Length | 312 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLKLLSRPD WDQESYPDSS DFLVLIFFAP FFLFLRLILD RCIFERVARR LVVPKGLCAD SNERRKKVVK FKESAWKCLC SFSVEAFALY VTYKEPWFKD 101: TRSFWLGPGD QVWPDQKIKL KMKGMYMFVG GLNVYAFFAL FFWETRRSDF KVMLVHHIVT SFLIILSYVF RFARIGSVIL ALHEISDVFL EIGKMCKYSG 201: AETMTSVSFV LFFLSWTTLR LIYYPFWILW STSYESIKVK TEYWDKKHLM ETGPPLILFY YVFNTLLYCL QILHIYWWIL IYRVLISQIR AKGKVAKDIR 301: SDSEGEDDEH QD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)