AT1G25540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phytochrome and flowering time regulatory protein (PFT1) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PHYTOCHROME AND FLOWERING TIME 1 (PFT1); CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A (InterPro:IPR021419), von Willebrand factor, type A (InterPro:IPR002035); Has 144499 Blast hits to 47376 proteins in 2113 species: Archae - 36; Bacteria - 15041; Metazoa - 49547; Fungi - 14283; Plants - 10465; Viruses - 822; Other Eukaryotes - 54305 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8969392..8974446 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89571.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 836 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSEVKQLIV VAEGTAALGP YWQTIVSDYL EKIIRSFCGS ELNGERNPVS TVELSLVIFN SHGSYCACLV QRSGWTRDVD IFLHWLSSIQ FGGGGFNEVA 101: TAEGLAEALM MFSPPSGQAQ PSNDLKRHCI LITASNPHIL PTPVYRPRLQ NVERNENGDA QAESRLSDAE TVASYFAKCS VSLSVVCPKQ LPTIRALYNA 201: GKPNQQSADL SIDTAKNTFY LVLISENFVE ACAALSHSAT NLPQTQSPVK VDRATVAPSI PVTGQPPAPV SSANGPIQNR QPVSVGPVPT ATVKVEPSTV 301: TSMAPVPSFP HIPAVARPAT QAIPSIQTSS ASPVSQDMVS NAENAPDIKP VVVSGMTPPL RTGPPGGANV NLLNNLSQVR QVMSSAALAG AASSVGQSAV 401: AMHMSNMIST GMATSLPPSQ TVFSTGQQGI TSMAGSGALM GSAQTGQSPG PNNAFSPQTT SNVASNLGVS QPMQGMNQGS HSGAMMQGGI SMNQNMMSGL 501: GQGNVSSGTG GMMPTPGVGQ QAQSGIQQLG GSNSSAPNMQ LSQPSSGAMQ TSQSKYVKVW EGNLSGQRQG QPVLITRLEG YRSASASDSL AANWPPTMQI 601: VRLISQDHMN NKQYVGKADF LVFRAMSQHG FLGQLQDKKL CAVIQLPSQT LLLSVSDKAC RLIGMLFPGD MVVFKPQIPN QQQQQQQQLH QQQQQQQQIQ 701: QQQQQQQHLQ QQQMPQLQQQ QQQHQQQQQQ QHQLSQLQHH QQQQQQQQQQ QQQHQLTQLQ HHHQQQQQAS PLNQMQQQTS PLNQMQQQTS PLNQMQQQQQ 801: PQQMVMGGQA FAQAPGRSQQ GGGGGQPNMP GAGFMG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)