AT1G25350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ovule abortion 9 (OVA9); FUNCTIONS IN: glutamine-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, ovule development; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1 (InterPro:IPR007639), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 2 (InterPro:IPR007638), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (TAIR:AT5G19720.1); Has 13124 Blast hits to 13109 proteins in 2954 species: Archae - 262; Bacteria - 8524; Metazoa - 443; Fungi - 410; Plants - 177; Viruses - 0; Other Eukaryotes - 3308 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8889280..8894205 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91251.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.48 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 795 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLKDDNSEK SIELFISIGL DEKTARNTIN NNKVTANLTA VIHEAAVTDG CDRNTGNLLY SVATKFPTNA LVHRPTLLKY IVNSKIKTPA QLEAAFAFFA 101: STGPEDFKLN EFEEACGVGI EVSPEDIEKA VKGIFEENKK TILEQRYRTN VGELFGHVRK SLPWADPKIV KKLIDEKMYE LLGEKTAADN EKPTKKKEKK 201: EKPAKVEEKK AVVETTAEPS EEELNPYTIF PQPEQNFMVH TEVFFSDGSI LRCSNTKEVL DKHLKVTGGK VYTRFPPEPN GYLHIGHAKA MFVDFGLAKE 301: RGGCCYLRYD DTNPEAEKEE YINHIEEIVK WMGWEPFKIT YTSDYFQELY DLAVELIRRG HAYVDHQTAD EIKEYREKKM NSPWRDRPIE ESLKLFDEMR 401: RGIIEEGKAT LRMKQDMQSD NFNMYDLIAY RIKFAPHPKA GDKWCIYPSY DYAHCTVDSL ENITHSLCTL EFETRRASYY WLLHSLSLYM PYVWEYSRLN 501: VTNTVMSKRK LNYIVTNKYV DGWDDPRLLT LSGLRRRGVT STAINAFVRG IGITRSDGSM IHVSRLEHHI REELNKTAPR TMVVLNPLKV VITNLESDKL 601: IELDAKRWPD AQNDDPSAFY KVPFSRVVYI DQSDFRMKDS KDYYGLAPGK SVLLRYAFPI KCTNVVFADD NETVREIHAE YDPEKKSKPK GVLHWVAESS 701: PGEEPIKVEV RLFEKLFNSE NPAELNDAWL TDINPNSKMV ISGAYAVSTL KDAAVGDRFQ FERLGYYAVD KDSEPGKLVF NRTVTLRDSY GKGGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)