AT1G25300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Octicosapeptide/Phox/Bem1p family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Octicosapeptide/Phox/Bem1p family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT2G01190.1); Has 352 Blast hits to 352 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 352; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8871568..8872386 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 30604.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.60 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPQPSLNPK LHLLCSYGGR IMPLPPEKSL HYIGGETRLV IVPRGISFLD FFKLLSDKLL SGRSFSLKYK LPSCDFDSLI TVSDNEDLQN MIAEYDSTRL 101: RRIRLFLFPL NHVELTRQSV TVNRLLGLES PIFTSLSSVL SSPIFAPNNG PVQFVHHNKV NATTAEENRR QDEAASTTSS SMLPQENTSA ANDVGGFLDR 201: ETEIVEIQDQ PRPILQEPLP QQQQQPLIIC YLPVWQMRPH MVTYPVAAYA LTPATEHSPR LDPVPENQEN AT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)