AT1G24540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 86, subfamily C, polypeptide 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP86C | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 86, subfamily C, polypeptide 1 (CYP86C1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: petal, embryo, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 86, subfamily C, polypeptide 2 (TAIR:AT3G26125.1); Has 29011 Blast hits to 28908 proteins in 1488 species: Archae - 44; Bacteria - 2527; Metazoa - 10901; Fungi - 6353; Plants - 8121; Viruses - 3; Other Eukaryotes - 1062 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:8699751..8701319 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61059.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.39 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 522 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNVLISAVVW VYTHLRLSDV ALALVGLFLL SYLREKLVSK GGPVMWPVLG IIPMLALNKH DLFTWCTRCV VRSGGTFHYR GIWFGGAYGI MTADPANVEH 101: ILKTNFKNYP KGAFYRERFR DLLEDGIFNA DDELWKEERR VAKTEMHSSR FLEHTFTTMR DLVDQKLVPL MENLSTSKRV FDLQDLLLRF TFDNICISAF 201: GVYPGSLETG LPEIPFAKAF EDATEYTLAR FLIPPFVWKP MRFLGIGYER KLNNAVRIVH AFANKTVRER RNKMRKLGNL NDYADLLSRL MQREYEKEED 301: TTRGNYFSDK YFREFCTSFI IAGRDTTSVA LVWFFWLVQK HPEVEKRILR EIREIKRKLT TQETEDQFEA EDFREMVYLQ AALTESLRLY PSVPMEMKQA 401: LEDDVLPDGT RVKKGARIHY SVYSMGRIES IWGKDWEEFK PERWIKEGRI VSEDQFKYVV FNGGPRLCVG KKFAYTQMKM VAAAILMRYS VKVVQGQEIV 501: PKLTTTLYMK NGMNVMLQPR DW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)