AT1G24320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.935 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Six-hairpin glycosidases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Six-hairpin glycosidases superfamily protein; FUNCTIONS IN: mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity; INVOLVED IN: oligosaccharide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: glucosidase 1 (TAIR:AT1G67490.1); Has 471 Blast hits to 459 proteins in 200 species: Archae - 2; Bacteria - 99; Metazoa - 113; Fungi - 132; Plants - 45; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8626437..8630935 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90613.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 789 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGLSPSGDI KPLLDDESQR PRVITPFPSP KLTDLSMFQG EHKESLYWGT YRPQMYFGVR ARTPKSLVAG LMWLVMKDGK PVMRHFCENS NDLKSFGWKE 101: HNGRDFGRQE LFEQNMVLET SFVKSEEGSL GYGGDWSIRI NVQNMLNDDE VKRSTHLFFY LADEGCNGVN LGKDVLRLKE SSVLASGSRQ DVGNWQMHLK 201: SQNHLETHYC GFKTPDIVNL SGLVQQNLTA QEEKSGLLQL SDSSEDSSNI YVFQISTTNQ STIDIAFVSG IKEETSNMEN RIMSLTGLPL SSLLEEKHIA 301: FNAKFNECFN LSDKLDPETL VVGKAAIGNM LGGIGYFYGQ SKIHFPKSPL AKSEDDFLLY WPAELYTAVP SRPRFPRGFL WDEGFHQLLI WRWDVHITLE 401: IVGNWLDLMN IDGWIPREQV LGAEALSKIP KQYVVQFPSN GNPPTLLLVI RDLINGIRTE KFNEADRDKI LSFLDRAFVR LDAWFKWFNT SQIGKEKGSY 501: YWHGRDNITN RELNPQSLSS GLDDYPRASH PNEDERHVDL RCWMYLAADS MNSIQEFMGK NDILVTEDYS SIAKLLSDFT LLNQMHYDKD HGAYLDFGNH 601: TEEVRLVWKE VIHEDGHLSR ELVRETYGKP ELRLVPHIGY VSFFPFMFRI IPADSSILDK QLDLISNGNI VWSDYGLLSL AKTSSLYMKY NSEHQAPYWR 701: GAIWMNMNYM ILSSLHHYST VDGPYNSKAR TIYEELRSNL IRNVVRNYDQ TGIIWEHYDQ TKGTGEGARV FTGWSALILL IMSEEYPLF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)