AT1G24300.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.972 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GYF domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GYF domain-containing protein; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G27430.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8614515..8620420 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 165694.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||||||
| Length | 1490 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAEGKFDLPD DLILSKSSDQ LKELASDNSI PLSPQWLYTK SSESKMDVRS PTPMPMGNPS DPNLKDAWRL DAPEDKKDWK KIVSENETNR RWREEERETG 0101: LLGARKVDRR KTERRIDNVS SRETGEVKTT AASDRWNDVN SRAAVHEPRR DNKWSSRWGP DDKEKEARCE KVEINKDKEE PQSESQSVVS NVRATSERDS 0201: DPRDKWRPRH RMESQSGVPT SYRTAPGFGL DRGRAEGPNL GFTVGRGRAS TIGRGSSTSL IGAGSASAPV FRYPRGKLLD MYRKQKPDPS LGRIPTEMDE 0301: VASITQVALI EPLAFIAPDT EEEASINGIW KGRIISSEVY TSSGEESLGE NSLLKCRIPE SGETKVDGAL LGFMNGDNGS MKNNDSGLLG SHNGGLGAAS 0401: SVPRLNSVAS ESYGSFGAGY QVSHGSPEAV RSVFTKSPVL DGSESVVGSF EQDYMGKLQQ PDVEVDQSEA AMPPEDFLFL YIDPQGVIQG PFIGSDIISW 0501: FEQGFFGTDL QVRLANAPEG TPFQDLGRVM SYLKTESAHA HISNQESELE ETRLKANSDT GLSIAPVAES NDSSSMNGTS RSFSVYNNPS AQDNFQRKSE 0601: SEFYATPPHT EDRSFLDFST QDEGRAGVSG YASVKSSTSM HDAFMEVSGQ SAIPVESTKA ATQKQHENKL HPFGVLWSEL ESSNVPVNLL PNRSYDAMGE 0701: PTGAIDNRPI DSRRNTQVDP NMSLDGLASN RMSQFEHLSN RFNLGDQLSS NQHNQQQFQN RDMLSHSHIG DQAQDLDYLI TLQLQQQQKI QLQQQQKIQL 0801: QQQQKIQLQQ QQKMQLQQHQ LEQEHQLHQK LLQEQQQSHA RQLHYQQILQ GQTPDSRFGQ SHDFPRSNNV DQMLLEHQLM NELQKSSGHP SQNFAPYIEQ 0901: LAAGNFGQLP HEGHQRELLE QLLSTKMQSQ YGPMQSPYGQ LQSEPTRSLE YQLLQQEQLM QLANGVRHNT LLEEQRHIDP LWPSDHNDQL LRSHPGIQRS 1001: RSSTGFRQLD FHQQQQRPPF EDQFGQLERN LLYQQQLRQE LFEQGLPFER SASLPVSVSG MNLDPVNGLG LSQGLELRDA TTHMQIGNST LGFNHQNPRI 1101: PIGEPHFSQL ESMEGRWSGA DTQVVGDWAE SQLHRSNIDA EHHKMRSESR RMGEDSNSWM LGGTTEDRSK QLFMELLHQR PGHQSAESPS MNRGQSFDRM 1201: APSGLTPGIQ TLGGYSDHGG SHNAPSTFGA RAFSDEQINR SSGDRNNMGS LHRNNSLLSG IIDGGRSTQN ETQAFSNMYA MNKDANDIKT WNNVPPKNEG 1301: MGRMMSFEAQ DRMGKQAVLD SLVHGELPVV TPGQQSSLNI SDQYSDNLVG EDRRKDRLVV PSHGQNSVLL KRPPSSHSSS SHEGLIERIS DTASRTAASS 1401: YSGIEGGVRR ESGAAGNKGS TSEATSFSEM LKKSNSMKKV AAESNDVTEG SKGGGGKKKG KKGRQIDPAL LGFKVTSNRI MGEIHRADDF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)