AT1G24220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : paired amphipathic helix repeat-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
paired amphipathic helix repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G27240.1); Has 1794 Blast hits to 623 proteins in 172 species: Archae - 0; Bacteria - 12; Metazoa - 580; Fungi - 353; Plants - 743; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8578658..8582413 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85709.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||
| Length | 744 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGRSVSQEP TMADAVSYIE SVKEEFHDEP AKFDEFRMRL NEVRDDRVEK DRITARINEL ISGNPKLHLG SKVFFPEAEI TIPPKVEQRH ESVDAKKKRA 101: NRENHRKKKL KCLDSLVFPP MTKKIDEGKK SVKKVHKKFL VLSKVDRTIP PDANKELRKS RTMFGKSVPL EKTLDDARSY IDSVKEAFHD EPAKYAEFLK 201: LLNDYKARRL DADSVIARVD ELTKDHRNLL LGLRAILLPA AKSTIPHKAK GKRTARPEAS RTIPVKLKIT IIPPKARRTI PSEADKPTHT DELNFMNKLP 301: PKRRRTIPSE AEKPTHTDEL NFMNKLPTKR RRTIPSEAEK PTHTDELNFM NKLPTKARRT IPSEAEKPTH TDELNFMNKL KTRFQRIDTH VVGSFHSIMT 401: MYKEGKKSRK EVHEEVCDLL YYHEDLRADF TRIFPKLGSF RINISTISVH LFLEIFEVVY TVKRKLLARS VTTRPYSSSF TVSLKLTMDD DYRLEIASTI 501: RETVTYIADV KEAFLDEPAK FHEFLRLMND VCDHKIEEAN GSARMAEIIK GHPRLLLVLS VFFPKSKQYE EAARSISSEA SRTIPPKATI PPKSSRTISP 601: KANRTIPPKS KKTFPREAKR TIPREANRNR IMPSEAKKTI HPEDKRTTRP VDHLAFFIPK AKRTIPPAES NKNKKNARFQ GYGSHVVNSV LQILKMYSEG 701: NKSKDEAYQE VVSLLQNHVD LVMEFGDYFS GISAYNRFLR DGKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)