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AT1G24170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with putative galacturonosyltransferase activity.
Computational
Description (TAIR10)
LGT9; FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: glucosyl transferase family 8 (TAIR:AT1G70090.2); Has 2080 Blast hits to 2070 proteins in 453 species: Archae - 0; Bacteria - 1044; Metazoa - 227; Fungi - 4; Plants - 722; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410INQ0eggNOG:ENOG410YCH5EMBL:KJ138986
EnsemblPlants:AT1G24170EnsemblPlants:AT1G24170.1entrez:839030ExpressionAtlas:W8PW12
Gene3D:3.90.550.10GeneID:839030GO:GO:0016757Gramene:AT1G24170.1
hmmpanther:PTHR13778hmmpanther:PTHR13778:SF7InterPro:IPR002495InterPro:IPR029044
KEGG:ath:AT1G24170OMA:NVHGSCRPaxDb:W8PW12Pfam:O48684
Pfam:PF01501PhylomeDB:W8PW12ProteinModelPortal:W8PW12RefSeq:NP_173827.1
STRING:3702.AT1G24170.1SUPFAM:SSF53448tair10-symbols:GATL8tair10-symbols:LGT9
TMHMM:TMhelixUniGene:At.27907UniProt:O48684UniProt:W8PW12
Coordinates (TAIR10) chr1:-:8557451..8558632
Molecular Weight (calculated) 43991.50 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.12
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRFSLTVV CLIALLPFVV GIRLIPARIT SVGDGGGGGG NNGFSKLGPF MEAPEYRNGK ECVSSSVNRE NFVSSSSSSN DPSLVHIAMT LDSEYLRGSI
101: AAVHSVLRHA SCPENVFFHF IAAEFDSASP RVLSQLVRST FPSLNFKVYI FREDTVINLI SSSIRLALEN PLNYARNYLG DILDRSVERV IYLDSDVITV
201: DDITKLWNTV LTGSRVIGAP EYCHANFTQY FTSGFWSDPA LPGLISGQKP CYFNTGVMVM DLVRWREGNY REKLEQWMQL QKKMRIYDLG SLPPFLLVFA
301: GNVEAIDHRW NQHGLGGDNI RGSCRSLHPG PVSLLHWSGK GKPWVRLDEK RPCPLDHLWE PYDLYKHKIE RAKDQSLLGF ASLSELTDDS SFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)