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AT1G24020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MLP-like protein 423
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MLP-like protein 423 (MLP423); INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 28 (TAIR:AT1G70830.3); Has 1440 Blast hits to 1404 proteins in 125 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 1432; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:24252eggNOG:ENOG410IZM1eggNOG:ENOG410YSJNEMBL:AC002423
EMBL:AJ306136EMBL:AY052277EMBL:AY061912EMBL:AY088360
EMBL:CP002684EnsemblPlants:AT1G24020EnsemblPlants:AT1G24020.1EnsemblPlants:AT1G24020.2
entrez:839014Gene3D:3.30.530.20GeneID:839014Genevisible:Q93VR4
GO:GO:0006952GO:GO:0009607GO:GO:0016020Gramene:AT1G24020.1
Gramene:AT1G24020.2hmmpanther:PTHR31907hmmpanther:PTHR31907:SF1HOGENOM:HOG000239987
InParanoid:Q93VR4InterPro:IPR000916InterPro:IPR023393InterPro:IPR024949
KEGG:ath:AT1G24020OMA:TYGEGSPPaxDb:Q93VR4Pfam:PF00407
Pfam:Q93VR4PhylomeDB:Q93VR4PRIDE:Q93VR4PRINTS:PR00634
PRO:PR:Q93VR4ProteinModelPortal:Q93VR4Proteomes:UP000006548RefSeq:NP_001185075.1
RefSeq:NP_173813.1SMART:SM01037SMR:Q93VR4STRING:3702.AT1G24020.1
SUPFAM:SSF55961TAIR:AT1G24020tair10-symbols:MLP423UniGene:At.25399
UniGene:At.74164UniProt:Q93VR4
Coordinates (TAIR10) chr1:-:8500653..8501458
Molecular Weight (calculated) 17055.40 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.16
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSGVLHVE VEVKSPAEKF WVALGDGINL FPKAFPNDYK TIQVLAGDGN APGSIRLITY GEGSPLVKIS AERIEAVDLE NKSMSYSIIG GEMLEYYKTF
101: KGTITVIPKD GGSLLKWSGE FEKTAHEIDD PHVIKDFAVK NFKEIDEYLL KQTSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)