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AT1G23950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF626)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT1G23970.2); Has 156 Blast hits to 155 proteins in 3 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G23950EnsemblPlants:AT1G23950.1entrez:839006hmmpanther:PTHR31260
hmmpanther:PTHR31260:SF28Pfam:PF04776TIGRfam:TIGR01572
Coordinates (TAIR10) chr1:-:8470105..8471353
Molecular Weight (calculated) 30537.20 Da
IEP (calculated) 4.54
GRAVY (calculated) -0.21
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTEANSTAE EGYSVQRDFW RQAAKSDGFD LENISLPPGT NGIVMGLIPY DCQRARHYPF PVLVKLYAKF GLHRYNMLKG TSFQLATLMK FNMLPNYISS
101: FYMTLLAHDP DPAAGSSQKT FQVRVDEQQF GSLDINCSIA RPKHEGDLLE VSTETPFMPH FHGGALGDGI FKVELPDCLS DTALNELAGA VLRGELPEHV
201: FDDALYARAG GIFQGELPDW PSDDVLNDGK RFYMVKESEW QATDWISMYL ELVITTTDKS ISIVSFTYIY IN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)