AT1G23700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.997 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G70430.1); Has 103117 Blast hits to 102139 proteins in 2791 species: Archae - 74; Bacteria - 10936; Metazoa - 39156; Fungi - 10487; Plants - 25171; Viruses - 401; Other Eukaryotes - 16892 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:8379454..8381965 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53586.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.86 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 473 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSSPETRFP LVAKDYEILE EIGDGVYRAR CILLDEIVAI KIWNLEKCTN DLETIRKEVH RLSLIDHPNL LRVHCSFIDS SSLWIVMPFM SCGSSLNIMK 101: SVYPNGLEEP VIAILLREIL KALVYLHGLG HIHRNVKAGN VLVDSEGTVK LGDFEVSASM FDSVERMRTS SENTFVGNPR RMAPEKDMQQ VDGYDFKVDI 201: WSFGMTALEL AHGHSPTTVL PLNLQNSPFP NYEEDTKFSK SFRELVAACL IEDPEKRPTA SQLLEYPFLQ QTLSTEYLAS TFLDGLSPLG ERYRKLKEEK 301: AKLVKGVDGN KEKVSQENVE ALLMEPASLV NPVSCDTAQV LPILQNILIQ NDIQRENVEA LLTEPAILVN PVSCDTAQVL PIVQNILIQN DIQRKRLIGL 401: MQLCDPTAGK FAVLSLEFAS SLCYKFHDLI LIFVQKSEFR LAIQKLGRYQ QQRQIYCLRF TFCSRGNDKF HKL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)