AT1G23640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23660.1); Has 270 Blast hits to 130 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8367170..8370280 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 49056.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.07 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||
| Length | 424 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSVFPGFGGW INQNIQQPPK AESRRSKNVK SNSVSEKDTN NEEGLNYDEE ETKRQNELWK AAEKKHPWYD APPKVKATKS RKVLKKDGPR QIVRLKKAVA 101: WDFLWWSGEF PINLIVDVNK KDLTAKYKKE KMMFMKVFEG NWKIEPLYVD SGQEENLEFR IHVGALFSGS INPHVEEPHE VESKSPASNS VWAVDPKYYD 201: LAEVKKESRL WRAAEKKHPW YDAPAKVKVT TKKCLCHLNI EFKLGLPPEA VYEMFTNPNN FPFFKEDKAG RQRLENKSTK VLKKDGPRQT TEVEKALSWN 301: FLGCSVDIPI HLIIHENHKN LTAKYTTKKM MLMKVFKGSW KVEPDYVDQE RLCKSRSPKS REEYKICSGG QGKVGSKVTM EQIFEPSSLL NRPPVSWIIR 401: GITIRTTKIL LEDLRKAGTT LREV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)