AT1G23590.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.735 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : Domain of unknown function DUF220 | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
Domain of unknown function DUF220; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function DUF220 (TAIR:AT1G23600.1); Has 137 Blast hits to 124 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:8359440..8360521 | ||||||||||||||||||||
| Molecular Weight (calculated) | 25348.60 Da | ||||||||||||||||||||
| IEP (calculated) | 9.95 | ||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||
| Length | 217 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQQSPKAEFK KSENNRSKSV SEMNTNNVDD EVMEQGKLWR DAEKKYPWYD APPKVKVTTK KGLCHMYIEL TFGLPPRSVF ELFTNPDNLP LVSDKSWRQL 101: LVNKKRKVLK RDGPRQIVEV DKVVAWDFLW WSGGMPININ AVENEKDLRG KYKKQKMKFM KVFEGSYKVE PIYVDFERLC NQKEPKSPEE YKKCSGGQGK 201: IASKVTMDQI FSAISYF |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)